PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G025300.1.p
Common NameGLYMA_17G025300, LOC100794902
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 124aa    MW: 13966.8 Da    PI: 8.0242
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G025300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB167.41.8e-5220115297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          reqdr+lPianv++imk++lP nakisk++ket+qecvsefisfvtseas+kc++e+rkt+ngdd++wal++lGf+dy+epl+ yl++yr
  Glyma.17G025300.1.p  20 REQDRLLPIANVGKIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRRYLQRYR 109
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          e e ++
  Glyma.17G025300.1.p 110 EQELDR 115
                          *99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5017118IPR009072Histone-fold
SuperFamilySSF471133.55E-3822117IPR009072Histone-fold
PfamPF008082.4E-272589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.8E-195371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.8E-197290No hitNo description
PRINTSPR006151.8E-1991109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MMDNVGGSSS NIAENSGIIR EQDRLLPIAN VGKIMKQILP PNAKISKESK ETMQECVSEF  60
ISFVTSEASE KCRKERRKTV NGDDICWALG SLGFDDYAEP LRRYLQRYRE QELDRANNPP  120
KRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4419110192Transcription factor HapC (Eurofung)
4g92_B1e-4419110192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625184.11e-87PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822481e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLI1MRH01e-87I1MRH0_SOYBN; Uncharacterized protein
STRINGGLYMA17G02810.13e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.17e-57nuclear factor Y, subunit B5